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Analysis of Molecular Biological Characteristics of Structural Genes of Getah Virus (SZC30) Isolated from Midge
- LI Nan, HE Yuwen, ZUO Yuanyuan, MENG Jinxin, XU Tiangang, WANG Jinglin
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2021, 48(4):
1149-1160.
doi:10.16431/j.cnki.1671-7236.2021.04.001
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To investigate the molecular characteristics of a Getah virus (GETV) strain SZC30 isolated from midge in Yunnan province and its phylogenetic relationship with GETV isolated from other vectors and host animals at home and abroad,the structural genes sequencing of a GETV strain SZC30 isolated from midge in Yunnan province for the first time in 2013 were amplified by 5 pairs of specific primers of GETV RT-PCR reactions.The sequenced cDNA fragments were analyzed by DNAStar software (SeqMan) and spliced to a complete structural genes.The structural genes of SZC30 strain was 3 762 nt in length and encoded capsid protein (C),E1,E2,E3 and 6K proteins with the length of 804,1 317,1 266,192 and 183 nt,and encoding 268,438,422,64 and 61 amino acids,respectively.Phylogenetic analysis based on C,E1 and E2 genes showed that SZC30 strain and other 27 strains of GETV isolated from different regions and hosts from 1955 to 2018 gradually evolved into four distinct evolutionary populations,including groupsⅠ,Ⅱ,Ⅲ and Ⅳ.The SZC30 strain was clustered within group Ⅲ with other GETV isolates from mosquitoes or animals in China,Korea and Japan,with nucleotide homology of more than 98.0%,amino acid homology of more than 98.9%,which indicated more related relationship between those GETV.However,SZC30 strain and other GETV isolates from mosquitoes in Malaysia,Russia were from a different evolutionary branch,and the homology of nucleotides were lower than 97.6%,which indicated that SZC30 strain had a far relationship with those GETV isolates from mosquitoes.Compared with other GETV isolates from mosquitoes in Malaysia (GenBank accession No.:AF339484),Hainan and Yunnan (GenBank accession No.:EU015061 and KY434327),there were 31 amino acid difference sites on C,E1 and E2 proteins of GETV strain SZC30 isolated from midge,but there were no difference with other GETV isolates from mosquitoes in Japan (GenBank accession No.:LC152056) and pigs in China (GenBank accession No.:MG865966 and MG865969),and the homology of amino acids were 100%.There were 2 potential glycosylation sites and 3 transmembrane domains on both of E1 and E2 proteins between SZC30 strain and other 27 strains of GETV.The analysis of antigen epitopes of T cells predicted that there were epitope differences between SZC30 strain and GETV isolated from mosquitoes,pigs,foxes,cattle and horses,and more epitope differences were found in E1 and E2 proteins.These results suggested that GETV isolated from midge had high homology and close phylogenetic relationship with most GETV isolated from other vectors and host animals and had similar similar molecular characteristics such as amino acid difference sites,potential glycosylation sites and transmembrane domains,suggesting that midge might be involved in the spread of local GETV as a potential vector.