动物寄生性线虫线粒体基因组研究进展

doi:10.16431/j.cnki.1671-7236.2023.11.028

Abstract

Abstract: Animal parasitic nematodes are one of the most diverse and abundant groups of animal parasites and pose severe threats to humans, domestic and wild animals.The mitogenome is the only extranuclear genetic material of animal parasitic nematodes and is an important information carrier for studying nematode species identification, genetic evolution and phylogenetics, as well as the prevention and control of nematodosis.In recent years, with the rapid development of next-generation sequencing and bioinformatics technology, more and more mitogenomes of animal parasitic nematodes were decoded, and up to February 28, 2022, there are 283 mitogenomes of animal parasitic nematodes deposited in GenBank of NCBI, including 213 nematode species, belonging to two subclasses of Secernentea and Adenophorea.Despite this, there is still a lack of systematic and comprehensive generalization about the characteristics and applications of animal parasitic nematode mitogenomes.Thus, this review aimed to summarize the structure and content, base preference, variations in tRNA/AT-enriched regions of the existing animal parasitic nematode mitogenomes which are sequenced so far and propose new gene arrangement (GA) divisions which contain 39 Gas, and also further concluded the mitogenome applications in population genetics, phylogeny, molecular epidemiology and diagnostics of animal parasitic nematodes, aiming to provide an informative reference for the prevention and control of animal nematodosis.

Key words: animal parasitic nematodes; mitogenomes; genetic evolution

CLC Number:

S855.9

WANG Lidan, XIE Yue. Research Progress of Animal Parasitic Nematode Mitogenomes[J]. China Animal Husbandry and Veterinary Medicine, 2023, 50(11): 4600-4611.

References

[1] 杨光友.兽医寄生虫病学[M].北京:中国农业出版社, 2017. YANG G Y.Veterinary Parasitology[M].Beijing:China Agricultural Press, 2017.(in Chinese)
[2] 唐仲璋, 唐崇惕.人畜线虫学[M].北京:科学出版社, 1987. TANG Z Z, TANG C T.Human and Animal Nematodes[M].Beijing:Science Press, 1987.(in Chinese)
[3] ANNESLEY S J, FISHER P R.Mitochondria in health and disease[J].Cells, 2019, 8:680.
[4] CHAN D C.Mitochondrial dynamics and its involvement in disease[J].Annual Review of Pathology, 2020, 15:235-259.
[5] ZARDOYA R.Recent advances in understanding mitochondrial genome diversity[J].F1000Research, 2020, 9:270.
[6] HU M, GASSER R B.Mitochondrial genomes of parasitic nematodes-progress and perspectives[J].Trends in Parasitology, 2006, 22(2):78-84.
[7] HU M, CHILTON N B, GASSER R B.The mitochondrial genomics of parasitic nematodes of socioeconomic importance:Recent progress, and implications for population genetics and systematics[J].Advances in Parasitology, 2004, 56:133-212.
[8] JEX A R, LITTLEWOOD D T, GASSER R B.Toward next-generation sequencing of mitochondrial genomes-focus on parasitic worms of animals and biotechnological implications[J].Biotechnology Advances, 2010, 28(1):151-159.
[9] TSANG W Y, LEMIRE B D.The role of mitochondria in the life of the nematode, Caenorhabditis elegans[J].Biochimica et Biophysica Acta, 2003, 1638(2):91-105.
[10] TIELENS A G, ROTTE C, VAN HELLEMOND J J, et al.Mitochondria as we don't know them[J].Trends in Biochemical Sciences, 2002, 27(11):564-572.
[11] KITA K, TAKAMIYA S.Electron-transfer complexes in Ascaris mitochondria[J].Advances in Parasitology, 2002, 51:95-131.
[12] SEDENSKY M M, MORGAN P G.Mitochondrial respiration and reactive oxygen species in C.elegans[J].Experimental Gerontology, 2006, 41(10):957-967.
[13] HAN L, YANG Y, LI H, et al.Gene rearrangements in the mitochondrial genome of ten ascaris species and phylogenetic implications for Ascaridoidea and Heterakoidea families[J].International Journal of Biological Macromolecules, 2022, 221:1394-1403.
[14] BANGOURA B, BRINEGAR B, CREEKMORE T E.Dictyocaulus cervi-like lungworm infection in a rocky mountainelk (Cervus canadensis nelsoni) from wyoming, USA[J].Journal of Wildlife Diseases, 2021, 57(1):71-81.
[15] THOMPSON P C, BILSKA-ZAJAC E, ZARLENGA D S, et al.Divergence at mitochondrial and ribosomal loci indicates the split between Asian and European populations of Trichinella spiralis occurred prior to swine domestication[J].Infection Genetics and Evolution, 2021, 88:104705.
[16] LAVROV D V, BROWN W M.Trichinella spiralis mtDNA:A nematode mitochondrial genome that encodes a putative atp8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans[J].Genetics, 2001, 157(2):621-637.
[17] KIM T, KERN E, PARK C, et al.The bipartite mitochondrial genome of Ruizia karukerae (Rhigonematomorpha, Nematoda)[J].Scientific Reports, 2018, 8:7482.
[18] LI Y, CHEN Y, WANG L, et al.The complete mitochondrial genome of the beef cattle hookworm Bunostomum phlebotomum (Nematoda:Bunostominae)[J].Mitochondrial DNA Part B Resources, 2021, 6(2):617-619.
[19] CHEN Y, WANG L, ZHOU X, et al.The mitochondrial genome of the sheep roundworm Ascaris ovis (Ascaridida:Nematoda) from Southwest China[J].Mitochondrial DNA Part B Resources, 2021, 6(2):410-412.
[20] PALEVICH N, MACLEAN P H, CHOI Y J, et al.Characterization of the complete mitochondrial genomes of two sibling species of parasitic roundworms, Haemonchus contortus and Teladorsagia circumcincta[J]. Frontiers in Genetics, 2020, 11:573395.
[21] LU H, HE B, HAO Y, et al.Comparative mitogenomic analysis of two Cuckoo Bees (Apoidea:Anthophila:Megachilidae) with phylogenetic implications[J].Insects, 2021, 12:29.
[22] YATAWARA L, WICKRAMASINGHE S, RAJAPAKSE R P V J, et al.The complete mitochondrial genome of Setaria digitata (Nematoda:Filarioidea):Mitochondrial gene content, arrangement and composition compared with other nematodes[J].Molecular and Biochemical Parasitology, 2010, 173(1):32-38.
[23] LIU G H, SHAO R, LI J Y, et al.The complete mitochondrial genomes of three parasitic nematodes of birds:A unique gene order and insights into nematode phylogeny[J].BMC Genomics, 2013, 14:414.
[24] 彭竹清.162种线虫线粒体基因组的特征分析及系统发育研究[D].重庆:重庆师范大学, 2020. PENG Z Q.Characteristic analysis of 162 nematode mitochondrial genomes and phylogenetic study[D].Chongqing:Chongqing Normal University, 2020.(in Chinese)
[25] DENG Y P, SULEMAN, ZHANG Y, et al.The complete mitochondrial genome of capillariid nematodes (Eucoleus annulatus):A novel gene arrangement and phylogenetic implications[J].Veterinary Parasitology, 2021, 296:109476.
[26] PARK J K, SULTANA T, LEE S H, et al.Monophyly of clade Ⅲ nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences[J].BMC Genomics, 2011, 12:392.
[27] KIM T, KIM J, CHO S, et al.Phylogeny of Rhigonematomorpha based on the complete mitochondrial genome of Rhigonema thysanophora (Nematoda:Chromadorea))[J].Zoologica Scripta, 2014, 43:289-303.
[28] ZOU H, JAKOVLIĆ I, CHEN R, et al.The complete mitochondrial genome of parasitic nematode Camallanus cotti:Extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class[J].BMC Genomics, 2017, 18:840.
[29] ZOU H, LEI H P, CHEN R, et al.Evolutionary rates of mitochondrial sequences and gene orders in Spirurina (Nematoda) are episodic but synchronised[J].Water Biology and Security, 2022, 1(2):100033.
[30] KO P P, HARAGUCHI M, HARA T, et al.Population genetics study of Strongyloides fuelleborni and phylogenetic considerations on primate-infecting species of Strongyloides based on their mitochondrial genome sequences[J].Parasitology International, 2023, 92:102663.
[31] KO P P, SUZUKI K, CANALES-RAMOS M, et al.Phylogenetic relationships of Strongyloides species in carnivore hosts[J].Parasitology International, 2020, 78:102151.
[32] JIN Y, LI X, LIU J, et al.Comparative analysis of mitochondrial DNA datasets indicates that Toxascaris leonina represents a species complex[J].Parasites & Vectors, 2019, 12:194.
[33] 胡丽莉.辐射杯环线虫和耳状杯环线虫线粒体全基因组的测定及分析[D].新乡:河南师范大学, 2019. HU L L.The complete mitochondrial genomes and phylogenetic analysis of Cylicocyclus Radiatus and Cylicocyclus Auriculatus[D].Xinxiang:Henan Normal University, 2019.(in Chinese)
[34] XIE Y, XU Z, ZHENG Y, et al.The mitochondrial genome of the dog hookworm Ancylostoma caninum (Nematoda, Ancylostomatidae) from Southwest China[J].Mitochondrial DNA Part B Resources, 2019, 4(2):3002-3004.
[35] 谢跃.四种蛔科贝蛔属线虫线粒体基因组全序列的测定与分析[D].成都:四川农业大学, 2012. XIE Y.Sequencing and analysis of the complete mitochondrial genomes of four Baylisascaris spp.within Ascarididae family[D].Chengdu:Sichuan Agricultural University, 2012.(in Chinese)
[36] ROMERO H, ZAVALA A, MUSTO H.Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces[J]. Nucleic Acids Research, 2000, 28(10):2084-2090.
[37] WANEKA G, SVENDSEN J M, HAVIRD J C, et al.Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-bias[J].Genetics, 2021, 219(2):iyab116.
[38] DEB B, UDDIN A, MAZUMDER G A, et al.Analysis of codon usage pattern of mitochondrial protein-coding genes in different hookworms[J].Molecular and Biochemical Parasitology, 2018, 219:24-32.
[39] XIE Y, CHEN Y, WANG L, et al.Comprehensive molecular characterization of the mitochondrial genome of the takin lungworm Varestrongylus eleguneniensis (Strongylida:Protostrongylidae)[J].International Journal of Molecular Sciences, 2022, 23(21):13597.
[40] XIE Y, WANG L, CHEN Y, et al.The complete mitogenome of Toxocara vitulorum:Novel in-sights into the phylogenetics in Toxocaridae[J].Animals, 2022, 12(24):3456.
[41] 杜会聪, 王瑶, 方加兴, 等.马尾松毛虫线粒体全基因组的测定与分析[J].林业科学, 2019, 55(12):162-172. DU H C, WANG Y, FANG J X, et al.Sequencing and analysis of the complete mitochondrial genome of Dendrolimus punctatus (Lepidoptera:Lasiocampidae)[J].Scientia Silvae Sinicae, 2019, 55(12):162-172.(in Chinese)
[42] 王瑶, 孔祥波, 张苏芳, 等.云南松毛虫线粒体基因组全序列测定和分析[J].林业科学研究, 2019, 32(5):11-20. WANG Y, KONG X B, ZHANG S F, et al.Sequencing and analysis of complete mitochondrial genome of Dendrolimus houi Lajonquiere (Lepidoptera:Lasiocampidae)[J].Forest Research, 2019, 32(5):11-20.(in Chinese)
[43] HENNIG O, PHILIPP S, BONIN S, et al.Adaptation of the Romanomermis culicivorax CCA-Adding enzyme to miniaturized armless tRNA substrates[J].International Journal of Molecular Sciences, 2020, 21(23):9047.
[44] JIA W, YAN H, LOU Z, et al.Mitochondrial genes and genomes support a cryptic species of tapeworm within Taenia taeniaeformis[J].Acta Tropica, 2012, 123(3):154-163.
[45] LI R, REN X, BI Y, et al.Comparative mitochondrial genomics reveals a possible role of a recent duplication of nadH dehydrogenase subunit 5 in gene regulation[J].DNA Research, 2018, 25(6):577-586.
[46] BOORE J L.Animal mitochondrial genomes[J].Nucleic Acids Research, 1999, 27(8):1767-1780.
[47] FENG S, POZZI A, STEJSKAL V, et al.Fragmentation in mitochondrial genomes in relation to elevated sequence divergence and extreme rearrangements[J].BMC Microbiology, 2022, 20:7.
[48] XIE Y, ZHANG Z, NIU L, et al.The mitochondrial genome of Baylisascaris procyonis[J].PLoS One, 2011, 6(10):e27066.
[49] BOGALE M, BANIYA A, DIGENNARO P.Nematode identification techniques and recent advances[J].Plants (Basel, Switzerland), 2020, 9(10):1260.
[50] HODDA M.Phylum Nematoda:A classification, catalogue and index of valid genera, with a census of valid species[J].Zootaxa, 2022, 5114(1):1-289.
[51] LI Y, NIU L, WANG Q, et al.Molecular characterization and phylogenetic analysis of ascarid nematodes from twenty-one species of captive wild mammals based on mitochondrial and nuclear sequences[J].Parasitology, 2012, 139(10):1329-1338.
[52] XIE Y, NIU L, ZHAO B, et al.Complete mitochondrial genomes of chimpanzee- and gibbon-derived Ascaris isolated from a zoological garden in Southwest China[J].PLoS One, 2013, 8(12):e82795.
[53] 何丽.裂头蚴及结膜吸吮线虫的基因鉴定及其亲缘关系分析[D].沈阳:中国医科大学, 2019. HE L.Gene identification and genetic relationship analysis of plerocercoid and T.callipaeda[D].Shenyang:China Medical University, 2019.(in Chinese)
[54] XU F F, NIU Y F, CHEN W Q, et al.Hookworm infection in central China:Morphological and molecular diagnosis[J].Parasites & Vectors, 2021, 14:537.
[55] YONG H S, EAMSOBHANA P, SONG S L, et al.Molecular phylogeography of Angiostrongylus cantonensis (Nematoda:Angiostrongylidae) and genetic relationships with congeners using cytochrome b gene marker[J]. Acta Tropical, 2015, 148:66-71.
[56] SPOTIN A, MAHAMI-OSKOUEI M, NAMI S.Assessment of the global paradigms of genetic variability in Strongyloides stercoralis infrapopulations determined by mitochondrial DNA sequences[J].Comparative Immunology, Microbiology and Infectious Diseases, 2019, 67:101354.
[57] 高远.马五种盅口亚科线虫线粒体全基因组比较与进化分析[D].大庆:黑龙江八一农垦大学, 2018. GAO Y.The comparative and phylogenetic analyses of complete mt genomes of five Cyathostominae nematodes of equine[D].Daqing:Heilongjiang Bayi Agricultural University, 2018.(in Chinese)
[58] GAO Y, WANG X, MA X, et al.Characterization of the complete mitochondrial genomes of Coronocyclus labiatus and Cylicodontophorus bicoronatus:Comparison with Strongylidae species and phylogenetic implication[J].Veterinary Parasitology, 2021, 290:109359.
[59] 周艳强.大熊猫西氏贝蛔虫种群历史和系统进化研究[D].哈尔滨:东北林业大学, 2022. ZHOU Y Q.Study on population history and system evolution of giant panda Baylisascaris schroederi[D].Harbin:Northeast Forestry University, 2022.(in Chinese)
[60] ZHOU X, XIE Y, ZHANG Z, et al.Analysis of the genetic diversity of the nematode parasite Baylisascaris schroederi from wild giant pandas in different mountain ranges in China[J].Parasites & Vectors, 2013, 6:233.

Research Progress of Animal Parasitic Nematode Mitogenomes

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