China Animal Husbandry and Veterinary Medicine ›› 2023, Vol. 50 ›› Issue (6): 2427-2438.doi: 10.16431/j.cnki.1671-7236.2023.06.027
• Preventive Veterinary Medicine • Previous Articles Next Articles
LI Jie1,2, CHEN Chuwen1,2, ZHAO Ruipeng1,3, LIU Yuan1,2, LI Zhixiong1,2
Received:
2022-11-10
Online:
2023-06-05
Published:
2023-05-30
CLC Number:
LI Jie, CHEN Chuwen, ZHAO Ruipeng, LIU Yuan, LI Zhixiong. Research Progress on Long Non-coding RNA of Muscle Development in Livestock and Poultry[J]. China Animal Husbandry and Veterinary Medicine, 2023, 50(6): 2427-2438.
[1] HANGAUER M J, VAUGHN I W, MCMANUS M T.Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs[J].PLoS Genetics, 2013, 9(6):e1003569. [2] DJEBALI S, DAVIS C A, MERKEL A, et al.Landscape of transcription in human cells[J].Nature, 2012, 489(7414):101-108. [3] PONTING C P, OLIVER P L, REIK W.Evolution and functions of long noncoding RNAs[J].Cell, 2009, 136(4):629-641. [4] GUTTMAN M, RINN J L.Modular regulatory principles of large non-coding RNAs[J].Nature, 2012, 482(7385):339-346. [5] LI Y Y, CHEN X N, SUN H, et al.Long non-coding RNAs in the regulation of skeletal myogenesis and muscle diseases[J].Cancer Letters, 2018, 417:58-64. [6] GOODPASTER B H, SPARKS L M.Metabolic flexibility in health and disease[J].Cell Metabolism, 2017, 25(5):1027-1036. [7] CARNES M E, PINS G D.Skeletal muscle tissue engineering:Biomaterials-based strategies for the treatment of volumetric muscle loss[J].Bioengineering, 2020, 7(3):85. [8] MCFARLAND D C.Influence of growth factors on poultry myogenic satellite cells[J].Poultry Science, 1999, 78(5):747-758. [9] TROTTER J A, PURSLOW P P.Functional morphology of the endomysium in series fibered muscles[J].Journal of Morphology, 1992, 212(2):109-122. [10] MURPHY M, KARDON G.Origin of vertebrate limb muscle:The role of progenitor and myoblast populations[J].Current Topics in Development Biology, 2011, 96:1-32. [11] SABOURIN L A, RUDNICKI M A.The molecular regulation of myogenesis[J].Clinical Genetics, 2000, 57(1):16-25. [12] PICARD B, LEFAUCHEUR L, BERRI C, et al.Muscle fibre ontogenesis in farm animal species[J].Reproduction Nutrition Development, 2002, 42(5):415-431. [13] BUCKINGHAM M, RELAIX F.PAX3 and PAX7 as upstream regulators of myogenesis[J]. Seminars in Cell and Developmental Biology, 2015, 44(8):115-125. [14] 赵为民.猪胚胎骨骼肌中基因间长非编码RNA的鉴定, 特征及功能的初步分析[D].北京:中国农业科学院, 2013. ZHAO W M.Identification, characterization and function analysis of lincRNA in the fetal skeletal muscle of porcine[D].Beijing:Chinese Academy of Agricultural Sciences, 2013.(in Chinese) [15] ZHAO W, MU Y, MA L, et al.Systematic identification and characterization of long non-coding RNAs in fetal porcine skeletal muscle development[J].Scientific Reports, 2015, 5(1):8957. [16] BRANNAN C I, DEES E C, INGRAM R S, et al.The product of the H19 gene may function as an RNA[J].Molecular & Cellular Biology, 1990, 10(1):28-36. [17] OKAZAKI Y, FURUNO M, KASUKAWA T, et al.Analysis of the mouse transcriptome based on functional annotation of 60770 full-length cDNAs[J].Nature, 2002, 420(6915):563-573. [18] GUTTMAN M, AMIT I, GARBER M, et al.Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals[J].Nature, 2009, 458(7235):223. [19] MECER T R, MATTICK J S.Structure and function of long noncoding RNAs in epigenetic regulation[J]. Nature Structural & Molecular Biology, 2013, 20:300-307. [20] DIECI G, FIORINO G, CASTELNUOVO M, et al.The expanding RNA polymerase Ⅲ transcriptome[J].Trends in Genetics, 2007, 23(12):614-622. [21] MENDELL J T, KOPP F.Functional classification and experimental dissection of long noncoding RNAs[J].Cell, 2013, 172(3):393-407. [22] KNOLL M, LODISH H F, SUN L.Long non-coding RNAs as regulators of the endocrine system[J].Nature Reviews Endocrinology, 2015, 11(3):151-160. [23] WANG K C, CHANG H Y.Molecular mechanisms of long noncoding RNAs[J].Molecular Cell, 2011, 43(6):904-914. [24] MIAO-CHIH T, OHAD M, YUE W, et al.Long noncoding RNA as modular scaffold of histone modification complexes[J]. Science, 2010, 329(5992):89-93. [25] 何春, 张琦悦, 孙浩玮, 等.miRNA和lncRNA在动物脂肪沉积中的研究进展[J].生物工程学报, 2020, 36(8):1504-1514. HE C, ZHANG Q Y, SUN H W, et al.Role of miRNA and lncRNA in animal fat deposition-A review[J].Chinese Journal of Biotechnology, 2020, 36(8):1504-1514.(in Chinese) [26] SALVIANO S A, LOBO A S C, ALMEIDA R C, et al.Besides pathology:Long non-coding RNA in cell and tissue homeostasis[J].Non-Coding RNA, 2018, 4(1):3. [27] BUMGARNER S L, NEUERT G, VOIGHT B F, et al.Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment[J].Molecular Cell, 2012, 45(4):470-482. [28] ZHANG X J, CHEN M M, LIU X F, et al.A novel lncRNA, lnc403, involved in bovine skeletal muscle myogenesis by mediating KRAS/Myf6[J].Gene, 2020, 751:144706. [29] ZHANG J, CAI B L, MA M T, et al.lncRNA SMARCD3-OT1 promotes muscle hypertrophy and fast-twitch fiber transformation via enhancing expression[J].International Journal of Molecular Sciences, 2022, 23(9):4510. [30] LI J X, ZHAO W J, LI Q Q, et al.Long non-coding RNA H19 promotes porcine satellite cell differentiation by interacting with TDP43[J].Genes (Basel), 2020, 11(3):259. [31] LI J X, SU T, ZOU C, et al.Long non-coding RNA H19 regulates porcine satellite cell differentiation through miR-140-5p/SOX4 and DBN1[J].Frontiers in Cell and Developmental Biology, 2020, 8:518724. [32] SALMENA L, POLISENO L, TAY Y, et al.A ceRNA hypothesis:The rosetta stone of a hidden RNA language?[J].Cell, 2011, 146(3):353-358. [33] THOMSON D W, DINGER M E.Endogenous microRNA sponges:Evidence and controversy[J].Nature Reviews Genetics, 2016, 17(5):272-283. [34] XU R, ZHANG X, XU Y, et al.Long noncoding RNA MST1P2 promotes cervical cancer progression by sponging with microRNA miR-133b[J].Bioengineered, 2021, 12(1):1851-1860. [35] SUN X, LI M, SUN Y, et al.The developmental transcriptome sequencing of bovine skeletal muscle reveals a long noncoding RNA, lncMD, promotes muscle differentiation by sponging miR-125b[J].Biochimica et Biophysica Acta(BBA)-Molecular Cell Research, 2016, 1863(11):2835-2845. [36] WANG J, CHEN M Y, CHEN J F, et al.lncRNA IMFlnc1 promotes porcine intramuscular adipocyte adipogenesis by sponging miR-199a-5p to up-regulate CAV-1[J].BMC Molecular Cell Biology, 2020, 21(1):77. [37] TONKIN J, ROSENTHAL N.One small step for muscle:A new micropeptide regulates performance[J].Cell Metabolism, 2015, 21(4):515-516. [38] WANG Y, WU S, ZHU X, et al.lncRNA-encoded polypeptide ASRPS inhibits triple-negative breast cancer angiogenesis[J].Journal of Experimental Medicine, 2020, 217(3):20190950. [39] 孟一妹, 蒋晶, 王禹涵, 等.长链非编码RNA编码肽在肿瘤中的作用机制[J].临床误诊误治, 2021, 34(9):113-116. MENG Y M, JIANG J, WANG Y H, et al.Mechanism of action of peptides encoded by long non-coding RNA in tumors[J]. Clinical Misdiagnosis & Mistherapy, 2021, 34(9):113-116.(in Chinese) [40] MATSUMOTO A, PASUT A, MATSUNOTO M, et al.mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide[J].Nature, 2016, 541(7636):228-232. [41] JIN J J, DU M M, WANG J, et al.Conservative analysis of synaptopodin-2 intron sense-overlapping lncRNA reveals its novel function in promoting muscle atrophy[J].Cachexia Sarcopenia Muscle, 2022, 13(4):2017-2030. [42] YU X, WANG Z, SUN H, et al.Long non-coding MEG3 is a marker for skeletal muscle development and meat production traits in pigs[J].Animal Genetics, 2018, 49(2):571-578. [43] 宋明坤, 薛明明, 张力戈, 等.影响藏猪与大约克夏猪肌肉品质的lncRNA的筛选及功能分析[J].畜牧兽医学报, 2022, 53(1):53-65. SONG M K, XUE M M, ZHANG L G, et al.Screening and functional analysis of lncRNA affecting muscle quality in Tibetan and Yorkshire pigs[J].Chinese Journal of Animal and Veterinary Sciences, 2022, 53(1):53-65.(in Chinese) [44] LV W, JIANG W, LUO H M, et al.Long noncoding RNA lncMREF promotes myogenic differentiation and muscle regeneration by interacting with the SMARCA5/p300 complex[J].Nucleic Acids Research, 2022, 50(18):10733-10755. [45] WANG S S, TAN B H, XIAO L Y, et al.Gm10561 long non-coding RNA promotes myogenesis by sponging miR-432[J].Epigenetics, 2022, 17(13):2039-2055. [46] LI T, WANG S, WU R, et al.Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing[J].Genomics, 2012, 99(5):292-298. [47] LI Y, JIN W, ZHAI B, et al.lncRNAs and their regulatory networks in breast muscle tissue of Chinese Gushi chickens during late postnatal development[J].BMC Genomics, 2021, 22(1):1-15. [48] CAI B, LI Z, MA M, et al.lncRNA-Six1 encodes a micropeptide to activate Six1 in cis and is involved in cell proliferation and muscle growth[J].Frontiers in Physiology, 2017, 8(20):230. [49] LUO W, CHEN J H, LI L M, et al.c-Myc inhibits myoblast differentiation and promotes myoblast proliferation and muscle fibre hypertrophy by regulating the expression of its target genes, miRNAs and lincRNAs[J].Cell Death and Differentiation, 2019, 26(3):426-442. [50] CAI B L, MA M T, ZHANG J, et al.lncEDCH1 improves mitochondrial function to reduce muscle atrophy by interacting with SERCA2[J].Molecular Therapy:Nucleic Acids, 2022, 27:319-334. [51] LI Z H, CAI B L, ABDALLA B A, et al.lncIRS1 controls muscle atrophy via sponging miR-15 family to activate IGF1-PI3K/Akt pathway[J].Cachexia Sarcopenia Muscle, 2019, 10(2):391-410. [52] CESANA M, CACCHIARELLI D, LEGNINI I, et al.A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA[J].Cell, 2011, 147(2):358-369. [53] ZHANG W Z, SUN B, ZHAO Y Q, et al.Proliferation of bovine myoblast by lncPRRX1 via regulation of the miR-137/CDC42 axis[J].International Journal of Biologucal Macromolecules, 2022, 220:33-42. [54] CHEN M M, ZHANG L L, GUO Y W, et al.A novel lncRNA promotes myogenesis of bovine skeletal muscle satellite cells via PFN1-RhoA/Rac1[J].Journal of Cellular and Molecular Medicine, 2021, 25(13):5988-6005. [55] SONG C, YANG Z, JIANG R, et al.lncRNA IGF2 AS regulates bovine myogenesis through different pathways[J].Molecular Therapy-Nucleic Acids, 2020, 21(8):874-884. [56] LIU M, LI B, PENG W W, et al.lncRNA-MEG3 promotes bovine myoblast differentiation by sponging miR-135[J].Journal of Cellular Physiology, 2019, 234(10):18361-18370. [57] 王瑞雪, 刘佳森, 李蕴华, 等.苏尼特羊不同生长时期肌肉组织lncRNA的差异表达分析[J].中国农业大学学报, 2021, 26(1):51-61. WANG R X, LIU J S, LI Y H, et al.Differential expression analysis of lncRNA in muscle tissue of Sunite sheep at different growth stages[J].Journal of China Agricultural University, 2021, 26(1):51-61.(in Chinese) [58] 睢梦华.lnc-002783在山羊骨骼肌中的表达及功能研究[D].合肥:安徽农业大学, 2019. SUI M H.Expression and function of lnc-002783 in goat skeletal muscle[D].Hefei:Anhui Agricultural University, 2019.(in Chinese) [59] WEI C H, WU M M, WANG C D, et al.Long noncoding RNA lnc-SEMT modulates IGF2 expression by sponging miR-125b to promote sheep muscle development and growth[J].Cellular Physiology and Biochemistry, 2018, 49(2):447-462. [60] ZHAN S Y, ZHANG Y, YANG C T, et al.lncR-133a suppresses myoblast differentiation by sponging miR-133a-3p to activate the FGFR1/ERK1/2 signaling pathway in goats[J].Genes, 2022, 13(5):818. [61] ZHAN S Y, QIN C Y, LI D D, et al.A novel long noncoding RNA, lncR-125b, promotes the differentiation of goat skeletal muscle satellite cells by sponging miR-125b[J].Frontiers in Genetics, 2019, 10:1171. [62] WU T Y, WANG S H, WANG L H, et al.Long noncoding RNA (lncRNA) CTTN-IT1 elevates skeletal muscle satellite cell proliferation and differentiation by acting as ceRNA for YAP1 through absorbing miR-29a in Hu sheep[J].Frontiers in Genetics, 2020, 11:843. [63] CHEN J H, ZHANG S, CHEN G H, et al.Transcriptome sequencing reveals pathways related to proliferation and differentiation of Shitou goose myoblasts[J].Animals (Basel), 2022, 12(21):2956. [64] KUANG L D, LEI M, LI C Y, et al.Identification of long non-coding RNAs related to skeletal muscle development in two rabbit breeds with different growth rate[J].International Journal of Molecular Sciences, 2018, 19(7):2046. [65] ZHU W W, HUANG Y, ZHANG Y, et al.Identification and characterization of long non-coding RNAs in juvenile and adult skeletal muscle of largemouth bass (Micropterus salmoides)[J].Comparative Biochemistry and Physiology(Part B), 2022, 261:110748. |
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