山羊腺苷单磷酸脱氨酶1基因启动子区单核苷酸多态性研究

›› 2013, Vol. ›› Issue (7): 127-132.

山羊腺苷单磷酸脱氨酶1基因启动子区单核苷酸多态性研究

王德凤¹, 杨永强², 韩勇¹

1. 贵州省畜牧兽医研究所, 贵州贵阳 550005;
2. 贵州大学动物科学学院, 高原山地动物遗传育种与繁殖教育部重点实验室, 贵州省动物遗传育种与繁殖重点实验室, 贵州贵阳 550025

收稿日期:2012-11-30 出版日期:2013-07-20 发布日期:2013-07-24
通讯作者: 韩勇 E-mail:hanyong7809@126.com
作者简介:王德凤(1981-),女,贵州人,硕士生,研究方向:动物营养。
基金资助:
贵州省科学技术基金项目"AMPD1基因与小香羊肉质风味的关联研究"(黔科合J字[2011]2225号);贵州省畜禽健康养殖技术创新能力建设项目(黔科合院所创能[2010]4004号);留学回国人员科研启动项目《贵州小香羊优质肉质风味关键影响因子研究》。

Study on the SNPs of AMPD1 Gene Promoter Region in Goat

WANG De-feng¹, YANG Yong-qiang², HAN Yong¹

1. Guizhou Animal Husbandry and Veterinary Medicine Institute, Guiyang 550005, China;
2. Guizhou Key Laboratory of Animal Genetics, Breeding and Reproduction, Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, College of Animal Sciences, Guizhou University, Guiyang 550025, China

Received:2012-11-30 Online:2013-07-20 Published:2013-07-24

摘要/Abstract

摘要： 为筛选腺苷单磷酸脱氨酶1(adenosine monophosphate deaminase 1,AMPD1)基因启动子区单核苷酸多态性(SNP)及研究其对启动子功能元件的影响,试验选择小香羊、黔北麻羊、努比山羊构建不同DNA池,直接测序结合BLAST筛选SNP位点。结果表明,AMPD1基因启动子区存在5个SNPs位点,分别为:T-614A、G-326A、G-309A、T-287C和T-165C。生物信息学软件预测得到AMPD1基因核心启动子区和转录因子结合位点,SNPs位点导致9个转录因子结合位点消失,而产生7个新的转录因子结合位点。AMPD1基因RNA二级结构在突变后显著改变,但未检测到CpG岛区域。

关键词: 腺苷单磷酸脱氨酶1; 单核苷酸多态性; 启动子; 小香羊; 黔北麻羊; 努比山羊

Abstract: The assay was aimed to screen the polymorphisms of AMPD1 gene promoter and analyze the effect of SNPs on function elements of promoter. Three goat breeds (Small-xiang goat, Qianbei ma goat, Nubian goat) were selected to construct DNA pools, SNPs sites were screened by direct sequencing subsequently and analyzed by BLAST. The results showed that 5 single nucleotide polymorphisms (SNPs) were found in the promoter region which included T-614A, G-326A, G-309A, T-287C and T-165C. Furthermore, bioinformatics tools were used to predict the core region of the promoter and identify various transcription factors binding sites. It demonstrated that 7 new transcription factors binding sites emerged while 9 previous transcription factors binding sites disappeared based on the SNPs found in this study, the remarkable change of secondary structure of RNA were also detected but the range of CpG islands were not predicted by the analysis of various softwares.

Key words: AMPD1; SNP; promoter; Small-xiang goat; Qianbei ma goat; Nubian goat

中图分类号:

S816.79

王德凤, 杨永强, 韩勇. 山羊腺苷单磷酸脱氨酶1基因启动子区单核苷酸多态性研究[J]. , 2013, (7): 127-132.

WANG De-feng, YANG Yong-qiang, HAN Yong. Study on the SNPs of AMPD1 Gene Promoter Region in Goat[J]. , 2013, (7): 127-132.

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