[1] SWINBANKS D.Government backs proteome proposal[J].Nature,1995,378(6558):653.
[2] WILKINS M R,SANCHEZ J C,GOOLEY A A,et al.Progress with proteome projects:Why all proteins expressed by a genome should be identified and how to do it[J].Biotechnology and Genetic Engineering Reviews,1996,13(1):19-50.
[3] SIMPSON R J,DOROW D S.Cancer proteomics:From signaling networks to tumor markers[J].Trends in Biotechnology,2001,19(10):S40-S48.
[4] WANG E T,SANDBERG R,LUO S,et al.Alternative isoform regulation in human tissue transcrip-tomes[J].Nature,2008,456(7221):470-476.
[5] KESKIN O,TUNCBAG N,GURSOY A.Predicting protein-protein interactions from the molecular to the proteome level[J].Chemical Reviews,2016,116(8):4884.
[6] 宋春侠,孙珍,秦洪强,等.修饰蛋白质组学分离鉴定新技术新方法[J].科学通报,2013,58(30):3007-3016. SONG C X,SUN Z,QIN H Q,et al.The new method and technology for the characterization and identification of post-translational modifications of proteins[J].Chinese Science Bulletin,2013,58(30):3007-3016.(in Chinese)
[7] 何大澄,肖雪媛.差异蛋白质组学及其应用[J].北京师范大学学报(自然科学版),2002,38(4):558-562. HE D C,XIAO X Y.Differential proteomics and its applications[J].Journal of Beijing Normal University,2002,38(4):558-562.(in Chinese)
[8] 王欣,唐婕.动物科学中的蛋白质组学技术应用[J].畜牧与饲料科学,2017,38(11):43-47. WANG X,TANG J.Application of proteomics technology in animal science researches[J].Animal Husbandry and Feed Science,2017,38(11):43-47.(in Chinese)
[9] 米思远,徐忠金,师科荣.蛋白质组学及其在家畜研究中的应用[J].畜牧与兽医,2016,48(10):119-124. MI S Y,XU Z J,SHI K R. Proteomics and its application in the livestock researches[J].Animal Husbandry & Veterinary Medicine,2016,48(10):119-124.(in Chinese)
[10] O'FARRELL P H.High resolution two-dimensional electrophoresis of proteins[J].Journal of Biological Chemistry,1975,250(10):4007.
[11] 胡莉萍,沈岩.双向凝胶电泳技术、蛋白质组学与基础和临床医学[J].医学分子生物学杂志,2001,23(2):118-121. HU L P,SHEN Y.Two-dimensional electrophoresis technique,proteomics and clinical medicine[J].Journal of Medical Molecular Biology,2001,23(2):118-121.(in Chinese)
[12] GYGI S P,CORTHALS G L,ZHANG Y,et al.Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology[J].Proceedings of the National Academy of Sciences of the United States of America,2000,97(17):9390-9395.
[13] UNLÜ M,MORGAN M E,MINDEN J S.Difference gel electrophoresis:A single gel method for detecting changes in protein extracts[J].Electrophoresis,1997,18(11):2071-2077.
[14] YAMASHITA M,FENN J B.Electrospray ion source.Another variation on the free-jet theme[J].Journal of Physical Chemistry,1984,88(20):4451-4459.
[15] BEAVIS R C,CHAIT B T.Matrix-assisted laser-desorption mass spectrometry using 355 nm radiation[J].Rapid Communications in Mass Spectrometry,1989,3(12):436.
[16] 盛龙生,苏焕华,郭丹滨.色谱质谱联用技术[M].北京:化学工业出版社,2006. SHENG L S,SU H H,GUO D B.Chromatography-mass Spectrometry Technology[M].Beijing:Chemical Industry Press,2006.(in Chinese)
[17] WEI W.Progress in fourier transform ion cyclotron resonance mass spectroscopy[J].Progress in Chemistry,2005,17(2):336-342.
[18] ENS W,STANDING K G.Hybrid quadrupole/time-of-flight mass spectrometers for analysis of biomolecules[J].Methods Enzymol,2005,402:49-78.
[19] 杨倩,王丹,常丽丽,等.生物质谱技术研究进展及其在蛋白质组学中的应用[J].中国农学通报,2015,31(1):239-246. YANG Q,WANG D,CHANG L L,et al.Progress in mass spectrometry and its application in proteomics[J].Chinese Agricultural Science Bulletin,2015,31(1):239-246.(in Chinese)
[20] RD Y J,SPEICHER S,GRIFFIN P R,et al.Peptide mass maps:A highly informative approach to protein identification[J].Analytical Biochemistry,1993,214(2):397-408.
[21] 王希,朱友林.现代质谱技术在蛋白质组学中的应用及其最新进展[J].生物技术通讯,2006,17(3):465-467. WANG X,ZHU Y L.Modern mass spectrometry's application and advances in proteomics[J].Letters in Biotechnology,2006,17(3):465-467.(in Chinese)
[22] 柳展基,杨小红,毕玉平.蛋白质组学在农业中的应用[J].分子植物育种,2006,4(z1):106-110. LIU Z J,YANG X H,BI Y P.Proteomics and its application in the agriculture[J].Molecular Plant Breeding,2006,4(z1):106-110.(in Chinese)
[23] ZHANG W Z,KRUTCHINSKY A N,CHAIT B T."De Novo" peptide sequeneing by MALDI-quadrupole-ion trap mass speetrometry:A preliminary study[J].Journal of the American Society for Mass Spectrometry,2003,14(9):1012-1021.
[24] RD Y J.Mass spectral analysis in proteomics[J].Annual Review of Biophysics and Biomolecular Structure,2004,33(1):297.
[25] HUANG H,LIN S,GARCIA B A,et al.Quantitative proteomic analysis of histone modifications[J].Chemical Reviews,2015,115(6):2376-2418.
[26] BLACKSTOCK W P,WEIR M P.Proteomics:Quantitative and physical mapping of cellular proteins[J].Trends in Biotechnology,1999,17(3):121-127.
[27] HOEDT E,ZHANG G,NEUBERT T A.Stable isotope labeling by amino acids in cell culture (SILAC) for quantitative proteomics[J].Advances in Experimental Medicine & Biology,2014,806:93.
[28] TEMME N M,STRIKWERDA J.Tandem mass tags:A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS[J].Analytical Chemistry,2003,75(8):1895-1904.
[29] WIESE S,REIDEGELD K A,MEYER H E,et al.Protein labeling by iTRAQ:A new tool for quantitative mass spectrometry in proteome research[J].Proteomics,2007,7(6):340-350.
[30] FU C,HU J,LIU T,et al.Quantitative analysis of redox-sensitive proteome with DIGE and ICAT[J].Journal of Proteome Research,2008,7(9):3789-3802.
[31] OLD W M,MEYER-ARENDT K,AVELINE-WOLF L,et al.Comparison of label-free methods for quantifying human proteins by shotgun proteomics[J].Molecular & Cellular Proteomics,2005,4(10):1487-1502.
[32] HUNG C W,THOLEY A.Tandem mass tag protein labeling for top-down identification and quantification[J].Analytical Chemistry,2012,84(1):161-170.
[33] ONG S E,BLAGOEV B,KRATCHMAROVA I,et al.Stable isotope labeling by amino acids in cell culture,SILAC,as a simple and accurate approach to expression proteomics[J].Molecular & Cellular Proteomics,2002,1(5):376-386.
[34] WU W W,WANG G,BAEK S J,et al.Comparative study of three proteomic quantitative methods,DIGE,cICAT,and iTRAQ,using 2D gel-or LC-MALDI TOF/TOF[J].Journal of Proteome Research,2006,5(3):651-658.
[35] 黄啸.生物信息学在蛋白质组学上的应用[J].安徽农业科学,2006,34(23):6142-6144. HUANG X.Application of bio-informatics in proteomics[J].Journal of Anhui Agricultural Sciences,2006,34(23):6142-6144.(in Chinese)
[36] HAN J Z,WANG Y B.Proteomics:Present and future in food science and technology[J].Trends in Food Science & Technology,2008,19(1):26-30.
[37] PICARD B,LEFAUCHEUR L,BERRI C,et al.Muscle fibre ontogenesis in farm animal species[J].Reproduction Nutrition Development,2002,42(5):415-431.
[38] BENDIXEN E.The use of proteomics in meat science[J].Meat Science,2005,71(1):138-149.
[39] DOHERTY M K,MCLEAN L,HAYTER J R,et al.The proteome of chicken skeletal muscle:Changes in soluble protein expression during growth in a layer strain[J].Proteomics,2004,4(7):2082-2093.
[40] WANG Z,PENG S,LI Q,et al.iTRAQ-based proteomic analysis reveals key proteins affecting muscle growth and lipid deposition in pigs[J].Scientific Reports,2017,7:46717.
[41] BOULEY J,MEUNIER B,CHAMBON C,et al.Proteomic analysis of bovine skeletal muscle hypertrophy[J].Proteomics,2010,5(2):490-500.
[42] FERREIRA A M,GROSSMANN J,FORTES C,et al.The sheep (Ovis aries) muscle proteome:Decoding the mechanisms of tolerance to seasonal weight loss using label-free proteomics[J].Journal of Proteomics,2017,161:57-67.
[43] MONIN G,LAMBOOY E,KLONT R.Influence of temperature variation on the metabolism of pig muscle in situ and after excision[J].Meat Science,1995,40(2):149-158.
[44] 贾建磊,张勤文,张红见,等.青藏高原有机牦牛背最长肌肌肉的差异蛋白质组学[J].肉类研究,2016,30(6):15-18. JIA J L,ZHANG Q W,ZHANG H J,et al.Differential proteomics analysis of fresh and refrigerated longissimus dorsi muscles of organically raised yaks from the Qinghai-Tibetan plateau[J].Meat Research,2016,30(6):15-18.
[45] PARK B Y,KIM N K,LEE C S,et al.Effect of fiber type on postmortem proteolysis in longissimus muscle of Landrace and Korean native Black pigs[J].Meat Science,2007,77(4):482-491.
[46] MOLETTE C,REMIGNON H,BABILE R.Modification of glycolyzing enzymes lowers meat quality of turkey[J].Poultry Science,2005,84(1):119-127.
[47] LAMETSCH R,KARLSSON A,ROSENVOLD K,et al.Postmortem proteome changes of porcine muscle related to tenderness[J].Journal of Agricultural & Food Chemistry,2003,51(24):6992-6997.
[48] TAYLOR R G,GEESINK G H,THOMPSON V F,et al.Is Z-disk degradation responsible for postmortem tenderization?[J].Journal of Animal Science,1995,73(5):1351.
[49] LI H,LINKE W A,OBERHAUSER A F,et al.Reverse engineering of the giant muscle protein titin[J].Nature,2002,418(6901):998-1002.
[50] HOROWITS R,KEMPNER E S,BISHER M E,et al.A physiological role for titin and nebulin in skeletal muscle[J].Nature,1986,323(6084):160-164.
[51] KOOHMARAIE M,SHACKELFORD S D,WHEELER T L,et al.A muscle hypertrophy condition in lamb (callipyge):Characterization of effects on muscle growth and meat quality traits[J].Journal of Animal Science,1995,73(12):3596-3607.
[52] VAN LAACK R J M.The Role of Proteins in Water-holding Capacity of Meat[M].America:Quality Attributes of Muscle Foods,1999.
[53] PENNY I F.Protein denaturation and water-holding capacity in pork muscle[J].International Journal of Food Science & Technology,1969,4(3):269-273.
[54] LIN J,WU Y,HAN B,et al.iTRAQ-based proteomic profiling of granulosa cells from lamb and ewe after superstimulation[J].Theriogenology,2017,101:99-108.
[55] MIAO X,LUO Q,ZHAO H,et al.Ovarian proteomic study reveals the possible molecular mechanism for hyperprolificacy of Small Tail Han sheep[J].Scientific Reports,2016,6:27606.
[56] SUN L,MIPAM T D,ZHAO F,et al.Comparative testis proteome of cattleyak from different developmental stages[J].Animal,2016,11(1):101-111.
[57] 薛夫光.利用iTRAQ蛋白质组学技术筛选与种公鸡繁殖力相关的候选蛋白[D].北京:中国农业科学院,2015. XUE F G.iTRAQ-based proteomic analyses for identification of candidate proteins underlying the fecundity of breeder cocks[D].Beijing:Chinese Academy of Agricultural Sciences,2015.(in Chinese)
[58] 杨梅,徐鑫,张居明,等.蛋白质组学在人乳及牛乳蛋白研究中的应用现状[J].食品与发酵工业,2014,40(11):182-187. YANG M,XU X,ZHANG J M,et al.The advance of proteomics research applications in human milk and bovine milk[J].Food and Fermentation Industries,2014,40(11):182-187.(in Chinese)
[59] MADAAN V.Review:Applications of mass spectrometry techniques in the investigation of milk proteome[J].European Journal of Mass Spectrometry,2011,17(4):305-320.
[60] YANG Y,BU D,ZHAO X,et al.Proteomic analysis of cow,yak,buffalo,goat and camel milk whey proteins:Quantitative differential expression patterns[J].Journal of Proteome Research,2013,12(4):1660-1667.
[61] YANG Y,NAN Z,ZHAO X,et al.Proteomic characterization and comparison of mammalian milk fat globule proteomes by iTRAQ analysis[J].Journal of Proteomics,2015,116:34-43.
[62] 杨永新,王加启,卜登攀,等.不同体细胞数牛乳中乳蛋白的比较蛋白质组学研究[J].中国农业科学,2011,44(12):2545-2552. YANG Y X,WANG J Q,BU D P,et al.Comparative proteomic analysis of the changes of milk protein associated with somatic cell counts[J].Scientia Agricultura Sinica,2011,44(12):2545-2552.(in Chinese)
[63] 邱宁,马美湖.鸡蛋蛋白质组学研究现状与展望[J].中国家禽,2011,33(2):4-10. QIU N,MA M H.Current status and prospects of egg proteomics research[J].China Poultry,2011,33(2):4-10.(in Chinese)
[64] WANG J,WU J.Proteomic analysis of fertilized egg white during early incubation[J].Eupa Open Proteomics,2014,2:38-59.
[65] QIU N,MA M,CAI Z,et al.Proteomic analysis of egg white proteins during the early phase of embryonic development[J].Journal of Proteomics,2012,75(6):1895-1905.
[66] ALMEIDA A M,PLOWMAN J E,HARLAND D P,et al.Influence of feed restriction on the wool proteome:A combined iTRAQ and fiber structural study[J].Journal of Proteomics,2014,103(3):170-177.
[67] 高丽霞,张燕军,张文广,等.内蒙古白绒山羊毛囊发育周期蛋白质表达谱分析[J].农业生物技术学报,2014,22(6):727-735. GAO L X,ZHANG Y J,ZHANG W G,et al.Analysis of protein expression profile of hair follicle cycle of Inner Mongolia cashmere goat(Capra cashmere)[J].Journal of Agricultural Biotechnology,2014,22(6):727-735.(in Chinese)
[68] HUANG J,LUO G,ZHANG Z,et al.iTRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus[J].BMC Genomics,2014,15(1):839.
[69] HOGARTH C J,FITZPATRICK J L,NOLAN A M,et al.Differential protein composition of bovine whey:A comparison of whey from healthy animals and from those with clinical mastitis[J].Proteomics,2004,4(7):2094-2100.
[70] 谢宇舟,密克,李军,等.猪源大肠杆菌O157:H7与O157的差异蛋白质组学分析[J].基因组学与应用生物学,2012,31(6):531-537. XIE Y Z,MI K,LI J,et al.Differential proteomic analysis between Escherichia coli isolates O157:H7 and O157 from swine[J].Genomics and Applied Biology,2012,31(6):531-537.(in Chinese)
[71] NAGARAJ S H,HARSHA H C,REVERTER A,et al.Proteomic analysis of the abomasal mucosal response following infection by the nematode,Haemonchus contortus,in genetically resistant and susceptible sheep[J].Journal of Proteomics,2012,75(7):2141-2152.
[72] EDVARDSSON U,ALEXANDERSSON M,NYSTRÖM A,et al.A proteome analysis of livers from obese (ob/ob) mice treated with the peroxisome proliferator WY14,643[J].Electrophoresis,1999,20(4-5):935-942.
[73] DANIEL H.Genomics and proteomics:Importance for the future of nutrition research[J].British Journal of Nutrition,2002,87(S2):S305-S311.
[74] 刘红南,李垚,张丽欣,等.蛋白质组学在动物营养中的应用[J].中国饲料,2009,8:29-30. LIU H N,LI Y,ZHANG L X,et al.Application of proteomics technology in animal nutrition[J].China Feed,2009,8:29-30.(in Chinese)
[75] 孟庆石.利用蛋白质组和磷酸化组学技术研究肉鸡热应激调控机制[D].北京:中国农业科学院,2016. MENG Q S.The study of broilers regulation mechanism under heat stress using proteomics and phosphoproteomics[D].Beijing:Chinese Academy of Agricultural Sciences,2016.(in Chinese)
[76] 辛向博.Myostatin基因对骨骼肌代谢机制影响的定量蛋白组学与磷酸化蛋白组学研究[D].天津:天津农学院,2018. XIN X B.Quantitative proteomics and phosphoproteomics study on the effect of myostatin gene on skeletal muscle metabolism[D].Tianjin:Tianjin Agricultural College,2018.(in Chinese)
[77] 王思丹,李春保,温思颖,等.禁食处理和宰后时间对鸡肉蛋白磷酸化水平的影响[J].食品科学,2013,34(19):270-274. WANG S D,LI C B,WEN S Y,et al.Effect of fasting and postmortem time on protein phosphorylation of chicken muscle[J].Food Science,2013,34(19):270-274.(in Chinese)
[78] 张爽,张楠,朱良齐,等.宰后早期猪肉、牛肉和鸡肉中能量代谢及蛋白质磷酸化[J].食品科学,2017,38(9):72-78. ZHANG S,ZHANG N,ZHU L Q,et al.Energy metabolism and protein phosphorylation of pork,beef and chicken during the early postmortem period[J].Food Science,2017,38(9):72-78.(in Chinese)
[79] 李蒙.蛋白质磷酸化调控肉色稳定性的作用机制[D].北京:中国农业科学院,2017. LI M.Mechanism of meat color stability regulated by protein phosphorylation[D].Beijing:Chinese Academy of Agricultural Sciences,2017.(in Chinese)
[80] 付杰丽,李玉华,甄林青,等.杜洛克猪精子体外4℃保存过程中活力参数及蛋白修饰变化[J].上海交通大学学报(农业科学版),2016,34(5):27-34. FU J L,LI Y H,ZHEN L Q,et al.Research on motility and protein modifications of Duroc sperm preserved at 4℃ in vitro[J].Journal of Shanghai Jiaotong University,2016,34(5):27-34(in Chinese)
[81] 胡启蒙.梅山猪和杜洛克猪精子活力和蛋白磷酸化比较研究[D].上海:上海交通大学,2014. HU Q M.The differences in sperm motility and protein phosphorylation between Meishan boar and Duroc boar[D].Shanghai:Shanghai Jiaotong University,2014.(in Chinese)
[82] LUO J,MITRA A,TIAN F,et al.Histone methylation analysis and pathway predictions in chickens after MDV infection[J].PLoS One,2012,7(7):e41849.
[83] 李珊珊,王加启,魏宏阳,等.乳蛋白磷酸化分析方法研究进展[J].东北农业大学学报,2010,41(1):149-152. LI S S,WANG J Q,WEI H Y,et al.Advances in research method of protein phosphorylation in milk[J].Journal of Northeast Agricultural University,2010,41(1):149-152.(in Chinese)
[84] LIANG L,WANG H,SHI H,et al.A designed peptide targets two types of modifications of p53 with anti-cancer activity[J].Cell Chemical Biology,2018,25(6):761-774.
[85] ZHAO C,WANG P,SI T,et al.MAP kinase cascades regulate the cold response by modulating ICE1 protein stability[J].Developmental Cell,2017,43(5):618-629.
[86] KWON O K,KIM S J,LEE Y,et al.Global analysis of phosphoproteome dynamics in embryonic development of zebrafish (Danio rerio)[J].Proteomics,2016,16(1):136-149.
[87] CARRICO C,MEYER J G,HE W,et al.The mitochondrial acylome emerges:Proteomics,regulation by sirtuins,and metabolic and disease implications[J].Cell Metabolism,2018,27(3):497-512. |