基于质谱的蛋白质组学技术及其在绒毛用羊中的应用

doi:10.16431/j.cnki.1671-7236.2015.12.011

Abstract

Abstract: Proteomics is a discipline which study proteome using the technology of protein isolation,identification and quantitative.Proteomics technology also has greatly developed,and proteomics technologies based on mass spectrometry have been widely used in the related field.In this review,we mainly introduced the advantages and disadvantages of some proteomic technologies based on mass spectrometry on the studies of protein-protein interactions,differential proteomics and quantitative proteomics,reviewed the advance of hair follicles and focused on the proteomic technologies application in wool-sheep and cashmere-goat.Finally,some prospects of proteomics technologies application in the hair follicles study of wool-sheep and cashmere-goat were presented.

Key words: proteomics technologies; mass spectrometry; wool-sheep and cashmere-goat

CLC Number:

WANG Le-le, ZHAO Meng, HAN Wen-jing, WANG Zhi-xin, ZHANG Yan-jun, LI Jin-quan. Proteomics Technologies based on Mass Spectrometry and their Application in Wool-sheep and Cashmere-goat[J]. , 2015, 42(12): 3179-3185.

References

[1] Cox J,Mann M.Is proteomics the new genomics[J].Cell,2007,130(3):395-398.
[2] Gingras A C,Aebersold R,Raught B.Advances in protein complex analysis using mass spectrometry[J].J Physiol,2005,563(1):11-21.
[3] Rogers S,Girolami M,Kolch W,et al.Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models[J].Bioinformatics, 2008,24(24),2894-2900.
[4] Dhingra V,Gupta M,Andacht T,et al.New frontiers in proteomics research:A perspective[J].Int J Pharm,2005,299(1-2):1-18.
[5] James P.Protein identification in the post-genome era:The rapid rise of proteomics[J]. Q Rev Biophys, 1997,30(4):279-331.
[6] 王岚,刘骁勇,张华宁,等.生物质谱技术在蛋白质组学研究中的应用[J].生物技术通讯,2007,1:166-168.
[7] 金锋.蛋白质组学研究相关技术与应用[J].明胶科学与技术,2008,1:6-9.
[8] Eng J K,McCormack A L,Yates J R.An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database[J].Journal of the American Society for Mass Spectrometry,1994,5(11):976-989.
[9] Perkins D N,Pappin D J,Creasy D M,et al.Probability-based protein identification by searching sequence databases using mass spectrometry data[J].Electrophoresis,1999,20(18):3551-3567.
[10] Fields S,Song O.A novel genetic system to detect protein-protein interactions[J].Nature,1989,340(6230):245-246.
[11] Chien C T,Bartel P L,Sternglanz R,et al.The two-hybrid system:A method to identify and clone genes for proteins that interact with a protein of interest[J].Proc Natl Acad Sci USA,1991,88(21):9578-9582.
[12] Andersson L,Porath J.Isolation of phosphoproteins by immobilized metal (Fe³⁺) affinity chromatography[J].Anal Biochem, 1986,154(1):250-254.
[13] Graves P R,Haystead T A.Molecular biologist's guide to proteomics[J].Microbiol Mol Biol Rev,2002,66(1):39-63.
[14] Shen J,Person M D,Zhu J,et al.Protein expression profiles in pancreatic adenocarcinoma compared with normal pancreatic tissue and tissue affected by pancreatitis as detected by two-dimensional gel electrophoresis and mass spectrometry[J].Cancer Res,2004,64(24):9018-9026.
[15] Pan S,Gu S,Bradbury E M,et al.Single peptide-based protein identification in human proteome through MALDI-TOF MS coupled with amino acids coded mass tagging[J].Anal Chem,2003,75(6):1316-1324.
[16] Ong S E,Blagoev B,Kratchmarova I,et al.Stable isotope labeling by amino acids in cell culture,SILAC,as a simple and accurate approach to expression proteomics[J].Mol Cell Proteomics,2002,1(5):376-386.
[17] Ong S E,Kratchmarova I,Mann M.Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)[J]. J Proteome Res,2003,2(2):173-181.
[18] Kumamoto T,Shalhevet D,Matsue H,et al.Hair follicles serve as local reservoirs of skin mast cell precursors[J].Blood,2003,102(5):1654-1660.
[19] Krugluger W,Rohrbacher W,Laciak K,et al.Reorganization of hair follicles in human skin organ culture induced by cultured by cultured human follicle derived cells[J].Experimental Dermatology,2005,14(8):580-585.
[20] 刘志红,任立明,郭英,等.毛囊的周期性变化和分子调控及其在绒山羊上的研究进展[J].中国畜牧兽医,2009,36(4):103-106.
[21] 余娟娟,刘积凤,赵金山,等.敖汉细毛羊Ⅰ型内根鞘角蛋白基因表达模式的研究分析[J].安徽农业科学,2012,40(18):9784-9786.
[22] Aya K,Kosuke T,Yuki Y,et al.Wnt5a promotes adhesion of human dermal fibroblasts by triggering a phosphatidylinositol-3 kinase/Akt signal[J].Cellular Signalling,2007,19:2498-2506.
[23] 田月珍,黄锡霞,柏妍,等.与毛囊生长发育及羊毛、羊绒品质相关基因的研究进展[J].中国草食动物科学,2013,3:55-58.
[24] Milla S E.Molecular mechanisms regulating hair follicle development investigative[J].Dernatology,2002,118(2):216-225.
[25] Ullrich R,Paus R.Molecular principles of hair follicle induction and morphogenesis[J].Bio Essays,2005,27(3):247-261.
[26] Xu T,Guo X,Wang H,et al.Differential gene expression analysis between anagen and telogen of Capra hircus skin based on the de novo assembled transcriptome sequence[J].Gene,2013,520(1):30-38.
[27] Geng R,Yuan C,Chen Y.Exploring differentially expressed genes by RNA-Seq in cashmere goat (Capra hircus) skin during hair follicle development and cycling[J].PLoS One,2013,8(4):e62704.
[28] Liu G,Liu R,Li Q,et al.Identification of microRNAs in wool follicles during anagen,catagen,and telogen phases in Tibetan sheep[J].PLoS One, 2013,8(10):e77801.
[29] Yuan C,Wang X,Geng R,et al.Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing[J].BMC Genomics, 2013,14:511.
[30] Bastiaan J H,Jansen J S.Transcriptomics and proteomics of human skin[J].Briefings in Functional Genomics and Proteomics,2003,1(4):326-341.
[31] Lee Y J,Rice R H,Lee Y M.Proteome analysis of human hair shaft:From protein identification to posttranslational modification[J].Molecular & Cellular Proteomics, 2006,5(5):789-799.
[32] Huang C M,Wade F K,Tivanka D,et al.Comparative proteomic profiling of murine skin[J].The Journal of Investigative Dermatology, 2003,121:51-64.
[33] Plowman J E,Deb-Choudhury S,Clerens S,et al.Unravelling the proteome of wool:Towards markers of wool quality traits[J].Journal of Proteomic,2012,75(14):4315-4324.
[34] Plowman J E,Warren G,Bryson T,et al.Application of proteomics for determining protein markers for wool quality traits[J].Electrophoresis,2000,21:1899-1906.
[35] Koehn H,Clerens S,Deb-Choudhury S,et al.The proteome of the wool cuticle[J].Journal of Proteome Research,2010,9(6):2920-2928.
[36] Clerens S,Cornellison C D,Deb-Choudhury S,et al.Developing the wool proteome[J].J Proteomics,2010,73(9):1722-1731.
[37] Yokohama M,Masuda T,Amano T,et al.Proteome analysis of cashmere[J].Animal Science Journal,2004,75(5):401-405.
[38] 杨建成,王熙,刘海英,等.蛋白质组学技术及其在绒山羊产业研究中的潜在应用[J].畜牧兽医科技信息,2013,11:7-8.
[39] Youngmi K,Taewoo K,Hyung-Min C.Qualitative identification of cashmere and yak fibers by protein fingerprint analysis using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry[J].Ind Eng Chem Res,2013,52(16):5563-5571.
[40] 高丽霞,张燕军,张文广,等.内蒙古白绒山羊毛囊发育周期蛋白质表达谱分析[J].农业生物技术学报,2014,6:727-735.

Proteomics Technologies based on Mass Spectrometry and their Application in Wool-sheep and Cashmere-goat

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