1 唐韶青,张沅,徐青. 不同动物部分组织基因组甲基化程度的差异分析[J]. 农业生物技术学报,2006,14:507~510. 2 Agrelo R,Setien F,Espada J,et al. Inactivation of the lamin A/C gene by CpG island promoter hypermethylation in hematologic malignancies,and its association with poor survival in nodal diffuse large B-cell lymphoma. J Clin Oncol,2005,23:3940~3947. 3 Aina R,Sgorbati S,Santagostino A,et al. Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plantarum,2004,121:472~480. 4 Barski A,Zhao K. Genomic location analysis by ChIP-Seq. J Cell Biochem,2009,107:11~18. 5 Bird A P. Gene number,noise reduction and biological complexity. Trends Genet,1995,11:94~100. 6 Clark S J,Harrison J,Frommer M. CpNpG methylation in mammalian cells. Nat Genet,1995,10:20~27. 7 Clark S J,Harrison J,Paul C L,et al. High sensitivity mapping of methylated cytosines. Nucleic Acids Res,1994,22:2990~2997. 8 Colella S,Shen L,Baggerly K A,et al. Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites. Biotechniques,2003,35:146~150. 9 de Montera B,Boulanger L,Taourit S,et al. Genetic identity of clones and methods to explore DNA. Cloning Stem Cells, 2004, 6:133~139. 10 Finnegan E J,Brettell R I,Dennis E S. The role of DNA methylation in the regulation of plant gene expression. EXS, 1993, 64:218~261. 11 Hajkova P,Erhardt S,Lane N,et al. Epigenetic reprogramming in mouse primordial germ cells. Mech Dev, 2002, 117:15~23. 12 Hatada I,Hayashizaki Y,Hirotsune S,et al. A genomic scanning method for higher organisms using restriction sites as landmarks. Proc Natl Acad Sci USA, 1991,88:9523~9527. 13 Herman J G,Baylin S B. Gene silencing in cancer in association with promoter hypermethylation. N Engl J Med, 2003, 349:2042~2054. 14 Hoffman B G,Jones S J M. Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing. J Endocrinol, 2009, 201:1~13. 15 Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nature Genetics, 2003, 33:245~254. 16 Jiang C D,Deng C Y, Xiong Y Z. Differences of cytosine methylation in parental lines and F1 hybrid of Large White×Meishan crosses and their effects on F1 performance. Journal of Agricultural Biotechnology,2006,2(3):195~200. 17 Keshet I,Schlesinger Y,Farkash S,et al. Evidence for an instructive mechanism of de novo methylation in cancer cells. Nat Genet,2006,38:149~153. 18 Kouzarides T. Chromatin modifications and their function. Cell,2007,128:693~705. 19 Labra M,Grassi F,Imazio S,et al. Genetic and DNA-methylation changes induced by potassium dichromate in Brassica napus L. Chemosphere, 2004, 54:1049~1058. 20 Lewin J,Schmitt A O,Adorjan P,et al. Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates. Bioinformatics, 2004, 20:3005~3012. 21 Li E,Bestor T H,Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell, 1992, 69:915~926. 22 Li X Q,Xu M L,Korban S S. DNA methylation profiles differ between field- and in vitro-grown leaves of apple. J Plant Physiol, 2002, 159:1229~1234. 23 Lister R,Ecker J R. Finding the fifth base: genome-wide sequencing of cytosine methylation. Genome Res, 2009, 19:959~966. 24 Madlung A,Masuelli R W,Watson B,et al. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol, 2002, 129:733~746. 25 Mayer W,Niveleau A,Walter J,et al. Demethylation of the zygotic paternal genome. Nature, 2000, 403:501~502. 26 Neff T,Armstrong S A. Chromatin maps,histone modifications and leukemia. Leukemia, 2009, 23:1243~1251. 27 Okazaki Y,Okuizumi H,Sasaki N,et al. An expanded system of restriction landmark genomic scanning (RLGS Ver. 1.8). Electrophoresis, 1995, 16:197~202. 28 Rabinowicz P D,Palmer L E,May B P,et al. Genes and transposons are differentially methylated in plants,but not in mammals. Genome Res, 2003, 13:2658~2664. 29 Rakyan V K,Hildmann T,Novik K L,et al. DNA methylation profiling of the human major histocompatibility complex: A pilot study for the human epigenome project. Plos Biol, 2004, 2:2170~2182. 30 Ramsahoye B H,Biniszkiewicz D,Lyko F,et al. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. P Natl Acad Sci USA, 2000, 97:5237~5242. 31 Raval A,Lucas D M,Matkovic J J,et al. TWIST2 demonstrates differential methylation in immunoglobulin variable heavy chain mutated and unmutated chronic lymphocytic leukemia. J Clin Oncol, 2005, 23:3877~3885. 32 Ronaghi M,Uhlen M,Nyren P. A sequencing method based on real-time pyrophosphate. Science, 1998, 281:363~365. 33 Sato S,Yoshimizu T,Sato E,et al. Erasure of methylation imprinting of Igf2r during mouse primordial germ-cell development. Mol Reprod Dev, 2003, 65:41~50. 34 Shaked H,Kashkush K,Ozkan H,et al. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell, 2001, 13:1749~1759. 35 Slotkin R K,Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 2007, 8:272~285. 36 Song F,Smith J F,Kimura M T,et al. Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression. Proc Natl Acad Sci USA, 2005, 102:3336~3341. 37 Takai D,Jones P A. Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc Natl Acad Sci USA, 2002, 99:3740~3745. 38 Tost J,Dunker J,Gut I G. Analysis and quantification of multiple methylation variable positions in CpG islands by Pyrosequencing. Biotechniques, 2003, 35:152~156. 39 Wang Y,Leung F C C. An evaluation of new criteria for CpG islands in the human genome as gene markers. Bioinformatics, 2004, 20:1170~1177. 40 Weber M,Davies J J,Wittig D,et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet, 2005, 37:853~862. 41 Xiong L Z,Xu C G,Maroof M A S,et al. Patterns of cytosine methylation in an elite rice hybrid and its parental lines,detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet, 1999, 261:439~446. 42 Xu M L,Li X Q, Korban S S. AFLP-based detection of DNA methylation. Plant Mol Biol Rep, 2000, 18:361~368. 43 Xu Q,Sun D X,Zhang Y. F-MSAP:A practical system to detect methylation in chicken genome. Chinese Science Bulletin, 2005, 18:2039~2044. 44 Xu Q,Zhang Y,Sun D X,et al. Analysis on DNA methylation of various tissues in chicken. Anim Biotechnol, 2007, 18:231~241. 45 Yan P S,Chen C M,Shi H D,et al. Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays. Cancer Res, 2001, 61:8375~8380. 46 Yang C,Zhang M J,Niu W P,et al. Analysis of DNA methylation in various swine tissues. Plos One, 2011, 6:47. |