›› 2015, Vol. 42 ›› Issue (6): 1355-1361.doi: 10.16431/j.cnki.1671-7236.2015.06.005

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Bioinformatics Analysis of Gene Sequence of Oral Rabies Vaccine SRV9 Strain

Gulmayra kare, JIAN Zi-jian, XIA Ting-ting, SU Xiao-hui, WEI Yu-yuan, WANG Wei, WU Hui, MAO Li-ping, ZHAI Shao-hua   

  1. College of Veterinary Medicine, Xinjiang Agricultural University, Urumqi 830052, China
  • Received:2015-01-14 Online:2015-06-20 Published:2015-07-23

Abstract: The study was aimed to understand the relationship between the gene sequence of SRV9 strain of oral rabies vaccine and biological characteristics,compare its major antigen site with other domestic and overseas strains of rabies vaccine,and clear the molecular basis as oral vaccine strain.The SRV9 N,P,M,G and L genes were cloned by RT-PCR,and connected into the pMD19-T vector,respectively,identified by enzyme digestion,sequenced by DNAStar software,and compared its sequences and the main antigen sites with other 11 strains.The results showed that the sequence homologies of SRV9 N,P,M,G and L genes with others were 81.8% to 100.0%,the whole genome phylogenetic tree showed that,all in the same big branch,they were belonged to genotypeⅠ,the evolutionary distance among SRV9 and ERA,SAD B19,SAG-2 were near,and were far among SRV9,aG and RC-HL.The amino acid homology analysis showed that the homology was high among SRV9 and SAD B19,SAG-2,ERA in extramembrance,transmembrane and intramembrane regions.The results would provide experimental basis for the study of gene recombinant attenuated vaccine strain by molecular biology techniques and development of oral rabies vaccine.

Key words: rabies virus; SRV9 strain; genome; sequence analysis

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