[1] 付晶,宁方勇,魏来,等.鹌鹑MC3R基因的SNPs及其与生长和屠体性状的相关研究[J].中国家禽,2011,33(20):13-17. FU J,NING F Y,WEI L,et al.Single nucleotide polymorphisms of quail melanocortin-3 receptor(MC3R) gene and its association analysis with growth and slaughter traits[J].China Poultry,2011,33(20):13-17.(in Chinese) [2] YANIK T,DURHAN S T.Specific functions of melanocortin-3 receptor (MC3R)[J].Journal Clinical Research in Pediatric Endocrinology,2023,15(1):1-6. [3] BRUNNER L,NICK H P,CUMIN F,et al.Leptin is a physiologically important regulator of food intake[J].International Journal of Obesity and Related Metabolic Disorders,1997,21(12):1152-1160. [4] CHEHAB F F.Leptin as a regulator of adipose mass and reproduction[J].Trends Pharmacological Sciences,2000,21(8):309-314. [5] BENOIT S,SCHWARTZ M,BASKIN D,et al. CNS melanocortin system involvement in the regulation of food intake[J].Hormones and Behavior,2000,37(4):299-305. [6] HOGGARD N,HUNTER L,DUNCAN J S,et al.Regulation of adipose tissue leptin secretion by alpha-melanocyte-stimulating hormone and agouti-related protein:Further evidence of an interaction between leptin and the melanocortin signalling system[J].Journal of Molecular Endocrinology,2004,32(1):145-153. [7] 付晶,宁方勇,潘宝丽,等.鹌鹑MC3R基因多态性与体重关系的研究[J].中国家禽,2010,32(22):21-24. FU J,NING F Y,PAN B L,et al.Relationship between melanocortin-3 receptor gene and body weight in quails[J].China Poultry,2010,32(22):21-24.(in Chinese) [8] 杜鹏,巴彩凤,周艳彬,等.比格犬黑皮质素受体3基因A167T对体质量性状的影响[J].中国组织工程研究与临床康复,2010,14(15):2740-2743. DU P,BA C F,ZHOU Y B,et al.Effects of melanocortin-3 receptor gene A167T on the body weight trait of Beagle dogs[J].Journal of Clinical Rehabilitative Tissue Engineering Research,2010,14(15):2740-2743.(in Chinese) [9] 张轶博,巴彩凤.MC3R和MC4R基因多态性位点与犬体型性状的关系[J].中国兽医学报,2013,33(4):627-629. ZHANG Y B,BA C F.Relationship between MC3R and MC4R gene polymorphism and body size traits in dogs[J].Chinese Journal Veterinary Science,2013,33(4):627-629.(in Chinese) [10] BUTLER A A,KESTERSON R A,KHONG K,et al.A unique metabolic syndrome causes obesity in the melanocortin-3 receptor-deficient mouse[J].Endocrinology,2000,141(9):3518-3521. [11] CHEN A S,MARSH D J,TRUMBAUER M E,et al.Inactivation of the mouse melanocortin-3 receptor results in increased fat mass and reduced lean body mass[J].Nature Genetics,2000,26(1):97-102. [12] 李鑫,李伟,刘洁,等.乌苏里貉MC3R蛋白的生物信息学分析[J].黑龙江畜牧兽医,2023,14:119-124. LI X,LI W,LIU J,et al.Bioinformatics analysis of MC3R protein in Ussuri raccoon dogs[J].Heilongjiang Animal Science and Veterinary Medicine,2023,14:119-124.(in Chinese) [13] BEHURA S K,SEVERSON D W.Comparative analysis of codon usage bias and codon context patterns between Dipteran and Hymenopteran sequenced genomes[J].Public Library of Science One,2012,7(8):e43111. [14] BARBHUIYA P A,UDDIN A,CHAKRABORTY S.Analysis of compositional properties and codon usage bias of mitochondrial CYB gene in Anura urodela and Gymnophiona[J].Gene,2020,751:144762. [15] CHU D,WEI L.Direct in vivo observation of the effect of codon usage bias on gene expression in Arabidopsis hybrids[J].Journal of Plant Physiology,2021,265:153490. [16] FRANZO G,TUCCIARONE C M,LEGNARDI M,et al.Effect of genome composition and codon bias on Infectious bronchitis virus evolution and adaptation to target tissues[J].BMC Genomics,2021,22(1):244. [17] HIA F,TAKEUCHI O.The effects of codon bias and optimality on mRNA and protein regulation[J].Cellular and Molecular Life Sciences,2021,78(5):1909-1928. [18] UDDIN A,MAZUMDER T H,CHOUDHURY M N,et al.Codon bias and gene expression of mitochondrial ND2 gene in Chordates[J].Bioinformation,2015,11(8):407-412. [19] BISWAS K K,PALCHOUDHURY S,CHAKRABORTY P,et al.Codon usage bias analysis of Citrus tristeza virus:Higher codon adaptation to Citrus reticulata host[J].Viruses,2019,11(4):331. [20] LABELLA A L,OPULENTE D A,STEENWYK J L,et al.Variation and selection on codon usage bias across an entire subphylum[J].Public Library of Science Genetics,2019,15(7):e1008304. [21] KOKATE P P,TECHTMANN S M,WERNER T.Codon usage bias and dinucleotide preference in 29 Drosophila species[J].G3-Genes Genomes Genetics(Bethesda),2021,11(8):jkab191. [22] HUO X,LIU S,LI Y,et al.Analysis of synonymous codon usage of transcriptome database in Rheum palmatum[J].Journal of Life & Environmental Sciences,2021,9:10450. [23] HUGABOOM M,HATMAKER E A,LABELLA A L,et al.Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section flavi[J].G3-Genes Genomes Genetics(Bethesda),2023,13(1):jkac285. [24] 马建青,杨清芳,宋占锋,等.绵羊骨代谢相关基因VDR密码子偏好性分析[J].中国畜牧兽医,2022,49(8):2888-2898. MA J Q,YANG Q F,SONG Z F,et al.Analysis of codon usage bias of VDR gene related to bone metabolism in Ovis aries[J].China Animal Husbandry & Veterinary Medicine,2022,49(8):2888-2898.(in Chinese) [25] SHARP P M,TUOHY T M,MOSURSKI K R.Codon usage in yeast:Cluster analysis clearly differentiates highly and lowly expressed genes[J].Nucleic Acids Research,1986,14(13):5125-5143. [26] WRIGHT F.The 'effective number of codons’ used in a gene[J].Gene,1990,87(1):23-29. [27] WU P,XIAO W,LUO Y,et al.Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes[J].Frontiers in Microbiology,2023,4:1170790. [28] LI Q,LUO Y,SHA A,et al.Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species[J].Frontiers in Microbiology,2023,14:1134228. [29] HE Z,DING S,GUO J,et al.Synonymous codon usage analysis of three Narcissus potyviruses[J].Viruses,2022,14(5):846. [30] WANG L,XING H,YUAN Y,et al.Genome-wide analysis of codon usage bias in four sequenced cotton species[J].Public Library of Science One,2018,13(3):e0194372. [31] ANDARGIE M,CONGYI Z.Genome-wide analysis of codon usage in sesame (Sesamum indicum L.)[J].Heliyon,2021,8(1):e08687. [32] 张文娟.基于密码子水平的生物信息学分析及进化研究[D].上海:复旦大学,2006. ZHANG W J.Codon analysis and its application in bioinformatics and evolutionary studies[D].Shanghai:Fudan University,2006.(in Chinese) [33] FU Y,LIANG F,LI C,et al.Codon usage bias analysis in macronuclear genomes of ciliated protozoa[J].Microorganisms,2023,11(7):1833. [34] DURET L,Evolution of synonymous codon usage in metazoans[J].Current Opinion Genetics & Development,2002,12(6):640-649. [35] YANG C,ZHAO Q,WANG Y,et al.Comparative analysis of genomic and transcriptome sequences reveals divergent patterns of codon bias in wheat and its ancestor species[J].Frontiers in Genetics,2021,12:732432. [36] YU X,LIU J,LI H,et al.Comprehensive analysis of synonymous codon usage bias for complete genomes and E2 gene of Atypical porcine pestivirus[J].Biochemical Genetics,2021,59(3):799-812. [37] WONG E H,SMITH D K,RABADAN R,et al.Codon usage bias and the evolution of Influenza A viruses[J].BMC Evolutionary Biology,2010,10:253. [38] 宗秋芳,黄焱杰,吴丽思,等.猪Claudin家族基因密码子使用偏好性分析[J].浙江农业学报,2018,30(12):2007-2017. ZONG Q F,HUANG Y J,WU L S,et al.Analysis of genetic codon usage preference in pig Claudin family[J].Acta Agriculturae Zhejiangensis,2018,30(12):2007-2017.(in Chinese) [39] JIANG Y,DENG F,WANG H,et al.An extensive analysis on the global codon usage pattern of Baculoviruses[J].Archives of Virology,2008,153(12):2273-2282. [40] TROTTA E.Selection on codon bias in yeast:A transcriptional hypothesis[J].Nucleic Acids Research,2013,41(20):9382-9395. [41] CHEN H,SUN S,NORENBURG J L,et al.Mutation and selection cause codon usage and bias in mitochondrial genomes of ribbon worms (Nemertea)[J].Public Library of Science One,2014,9(1):e85631. [42] IRIARTE A,LAMOLLE G,MUSTO H.Codon usage bias:An endless tale[J].Journal of Molecular Evolution,2021,89(9-10):589-593. [43] ZHANG Y,SHEN Z,MENG X,et al.Codon usage patterns across seven Rosales species[J].BMC Plant Biology,2022,22(1):65. [44] JIA X,LIU S,ZHENG H,et al.Non-uniqueness of factors constraint on the codon usage in Bombyx mori[J].BMC Genomics,2015,16(1):356. [45] SUEOKA N.Translation-coupled violation of parity rule 2 in human genes is not the cause of heterogeneity of the DNA G+C content of third codon position[J].Gene,1999,238(1):53-58. [46] 赵禹,赵如莉,郜原.野骆驼基因组密码子偏好性分析[J].中国畜牧兽医,2023,50(2):429-439. ZHAO Y,ZHAO R L,GAO Y.Analysis of codon preference in Camelus ferus genome[J].China Animal Husbandry & Veterinary Medicine,2023,50(2):429-439.(in Chinese) [47] 李丽莎,李祥龙,周荣艳,等.山羊酪氨酸相关蛋白1(TYRP1)基因密码子偏好性分析[J].贵州农业科学,2016,44(3):113-119. LI L S,LI X L,ZHOU R Y,et al.Analysis of codon bias of TYRP1 gene in Capra hircus[J].Guizhou Agricultural Sciences,2016,44(3):113-119.(in Chinese) |