大长杂交猪DJ-1基因克隆、生物信息学及表达分析

doi:10.16431/j.cnki.1671-7236.2022.12.001

摘要/Abstract

摘要： 【目的】克隆大长杂交猪DJ-1基因CDS区并进行生物信息学分析，探讨DJ-1基因在猪脂肪组织中的表达规律，为后续探究该基因在猪脂肪沉积中的功能奠定基础。【方法】以大长杂交猪腹股沟皮下脂肪组织cDNA为模板，PCR扩增DJ-1基因CDS区，利用在线工具对DJ-1蛋白进行生物信息学分析；利用实时荧光定量PCR检测DJ-1基因在大长杂交猪、大白猪（瘦肉型猪）和莱芜猪（脂肪型猪）脂肪组织中的表达量，并比较表达差异。【结果】大长杂交猪DJ-1基因CDS区全长570 bp，编码189个氨基酸。系统进化树分析表明，大长杂交猪和牛亲缘关系最近，与斑马鱼亲缘关系最远。DJ-1蛋白分子质量为19.94 ku，是一种稳定的酸性、亲水性蛋白，且含有1个GAT_1超家族成员Thij结构域；无信号肽和跨膜结构域，具有21个磷酸化位点、4个N-糖基化修饰位点和1个O-糖基化修饰位点。DJ-1蛋白二级结构由α-螺旋、延伸链、β-转角、无规则卷曲组成，占比分别为42.86%、17.99%、7.94%和31.22%，三级结构预测结果与其一致。蛋白互作分析发现，DJ-1蛋白可能与SOD2、NDUFV2、SNCA、BCL2L1和MAP3K等蛋白存在相互作用。实时荧光定量PCR结果表明，DJ-1基因在大长杂交猪背膘、腹股沟脂肪和肾周脂肪组织中均有表达，但无显著差异（P>0.05）；且在大白猪脂肪组织中的表达量显著或极显著低于莱芜猪（P<0.05；P<0.01）。【结论】本研究成功克隆了大长杂交猪DJ-1基因CDS区，其编码蛋白属稳定的酸性、亲水性蛋白，在莱芜猪脂肪组织中的表达量显著或极显著高于大白猪。本试验结果为进一步研究猪DJ-1基因功能提供理论参考。

关键词: 猪; DJ-1基因; 生物信息学分析; 表达; 脂肪

Abstract: 【Objective】 The purpose of this study was to clone the CDS region of DJ-1 gene in Large White×Landrace pigs and analyzed by bioinformatics, explore the expression pattern of DJ-1 gene in porcine adipose tissue, and lay a foundation for further studies on the role of DJ-1 gene in porcine adipose deposition.【Method】 The CDS region of DJ-1 gene was amplified by PCR using the cDNA of inguinal subcutaneous adipose tissue in Large White×Landrace pigs as a template, and the bioinformatics analysis of DJ-1 protein was performed using online tools.Real-time quantitative PCR was used to measure the expression of DJ-1 gene in adipose tissue of Large White×Landrace pigs, Large White pigs (lean-type) and Laiwu pigs (obese-type), and the expression differences were compared.【Result】 The length of DJ-1 gene CDS in Large White×Landrace pigs was 570 bp, which coded 189 amino acids.According to the phylogenetic tree, Large White×Landrace pigs was most closely related to Bos taurus and most distantly related to Danio rerio.The molecular weight of DJ-1 protein was 19.94 ku, it was stable, acidic and hydrophilic protein, which had one conserved domain called GAT_1 superfamily Thij.The DJ-1 protein had 21 phosphorylation sites, 4 N-glycosylation modification sites and 1 O-glycosylation modification site, but no signal peptide and transmembrane domain.The secondary structure of DJ-1 protein was composed of alpha helix, extended chain, beta turn and random coil, the proportions were 42.86%, 17.99%, 7.94% and 31.22%, respectively, and the tertiary structure prediction results were consistent with them.Protein interaction analysis revealed that DJ-1 protein interacted with SOD2, NDUFV2, SNCA, BCL2L1 and MAP3K.Real-time quantitative PCR results showed that DJ-1 gene was generally expressed in backfat, inguinal fat and perirenal fat of Large White×Landrace pigs, there were no significant difference among them (P>0.05).The expression of DJ-1 gene in Large White pigs was significantly or extremely significantly lower than that of Laiwu pigs (P<0.05 or P<0.01).【Conclusion】 This study successfully cloned the CDS region of DJ-1 gene in Large White×Landrace pigs, and DJ-1 was a stable, acidic and hydrophilic protein.The expression of DJ-1 gene in Laiwu pigs was significantly or extremely significantly higher than that of Large White pigs. The results provided a theoretical reference for further study the function of porcine DJ-1 gene.

Key words: pigs; DJ-1 gene; bioinformatics analysis; expression; adipose

中图分类号:

炊林亚, 夏博策, 黄娇娇. 大长杂交猪DJ-1基因克隆、生物信息学及表达分析[J]. 中国畜牧兽医, 2022, 49(12): 4513-4523.

CHUI Linya, XIA Boce, HUANG Jiaojiao. Cloning, Bioinformatics and Expression Analysis of DJ-1 Gene in Large White×Landrace Pigs[J]. China Animal Husbandry and Veterinary Medicine, 2022, 49(12): 4513-4523.

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