China Animal Husbandry and Veterinary Medicine ›› 2020, Vol. 47 ›› Issue (10): 3058-3068.doi: 10.16431/j.cnki.1671-7236.2020.10.003
• Biotechnology • Previous Articles Next Articles
YUE Caijuan, LIANG Xiaojun, WANG Xiuqin, MA Qing, MA Jifeng, ZHANG Junli, WANG Xiaowei, Eerhehua
Received:
2020-04-01
Online:
2020-10-20
Published:
2020-10-17
CLC Number:
YUE Caijuan, LIANG Xiaojun, WANG Xiuqin, MA Qing, MA Jifeng, ZHANG Junli, WANG Xiaowei, Eerhehua. Whole Genome Methylation Variation Analysis of Longissimus Dorsi Between Tan Sheep and Hu Sheep[J]. China Animal Husbandry and Veterinary Medicine, 2020, 47(10): 3058-3068.
[1] | MEISSNER A.Epigenetic modifications in pluripotent and differentiated cells[J].Nature Biotechnology,2010,28(10):1079-1088. |
[2] | HUYNH K D,LEE J T.X-chromosome inactivation:Ahypothesis linking ontogeny and phylogeny[J].Nature Reviews Genetics,2005,6(5):410-418. |
[3] | AMANDINE H,PHILIPPE A.Genome-wide identification of new imprinted genes[J].Briefings in Functional Genomics,2010,9(4):304. |
[4] | SMITH Z D,CHAN M M,MIKKELSEN T S,et al.A unique regulatory phase of DNA methylation in the early mammalian embryo[J].Nature,2012,484(7394):339-344. |
[5] | SPISÁK S,KALMÁR A,GALAMB O,et al.Genome-wide screening of genes regulated by DNA methylation in colon cancer development[J].PLoS One,2012,7(10):e46215. |
[6] | 郭添福,张志燕,陈冬,等.不同性别大白猪肌肉全基因组高分辨率单碱基甲基化差异分析[J].畜牧兽医学报,2018,49(11):2326-2339. GUO T F,ZHANG Z Y,CHEN D,et al.High resolution and single base genome-wide methylation variance analysis of muscle of Large White pigs with different sexes[J].Chinese Journal of Animal and Veterinary Sciences,2018,49(11):2326-2339.(in Chinese) |
[7] | WILKINSOM M F.Evidence than DNA methylation engenders dynamic gene regulation[J].Proceedings of the National A-cademy of Sciences USA,2015,112(17):E2116. |
[8] | 楼平儿.猪不同年龄段骨骼肌的差异甲基化组分析[D].雅安:四川农业大学,2013. LOU P E.Aging-related DNA methylomes in porcine skeletal muscles[D].Ya'an:Sichuan Agricultural University,2013.(in Chinese) |
[9] | 张小丽.猪背部浅层和背部深层脂肪组织全基因组甲基化研究[D].雅安:四川农业大学,2013. ZHANG X L.Genome-wide DNA methylation changes between the superficial and deep backfat tissues of the pig[D]].Ya'an:Sichuan Agricultural University,2013.(in Chinese) |
[10] | 曹阳.杜寒杂交羊与小尾寒羊背最长肌全基因组甲基化与转录组比较分析[D].长春:吉林大学,2017. CAO Y.Comparative analysis of genome-wide methylation and RNA-seq in longissimus dorsi muscle between Dorper X small Tailed Han crossbred and Small Tailed Han sheep[D].Changchun:Jilin University,2017.(in Chinese) |
[11] | XI Y X,WEI L.BSMAP:Whole genome bisulfite sequence MAPping program[J].BMC Bioinformatics,2009,10:232. |
[12] | ALTUNA A,MATTHIAS K,LI S,et al.Methyl kit:A comprehensive R package for the analysis of genome-wide DNA methylation profiles[J].Genome Biology,2012,13(10):R87. |
[13] | KANEHISA M,GOTO S.KEGG:Kyoto encyclopedia of genes and genomes[J].Nucleic Acids Research,2000,28:27-30. |
[14] | JONES P A.Functions of DNA methylation:Islands,start sites,gene bodies and beyond[J].Nature Reviews Genetics,2012,13(7):484-492. |
[15] | JIN L,JIANG Z,XIA Y,et al.Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs[J].BMC Genomics,2014,15(1):653. |
[16] | SU Y Y,FAN Z P,WU X S,et al.Genome-wide DNA methylation profile of developing deciduous tooth germ im miniature pigs[J].BMC Genomics,2016,17:134. |
[17] | WANG H F,WANG J Y,NING C,et al.Genome-wide DNA methylation and transcriptome analyses reveal genes imvolved in immune responses of pig peripheral blood monomuclear cells to poly Ⅰ:C[J].Scientific Reports,2017,7(1):9709. |
[18] | KIM W,PARK H,SEO K S,et al.Characterization and functional inferences of a genome-wide DNA methylation profile in the loin (longissimus dorsi) muscle of swine[J].Asian-Australasian Journal of Animal Sciences,2018,31(1):3-12. |
[19] | LI M Z,WU H,LUO Z G,et al.An atlas of DNA methylomes in porcine adipose and muscle tissues[J].Nature Communications,2012,3:850. |
[20] | YANG Y L,LIANG G M,NIU G L,et al.Comparative analysis of DNA methylome and transcriptome of skeletal muscle in lean,obese,and mini-type pigs[J].Scientific Reports,2017,7:39883. |
[21] | KWAK W,KIM J N,KI D,et al.Genlome-wide DNA mmethylation profiles of small imtestine and liver in fast-growing and slow-growing weaning piglets[J].Asian-Australasian Journal of Animal Sciences,2014,27(11):1532-1539. |
[22] | SCHACHTSCHNEIDER K M,MADSEN O,PARK C,et al.Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model[J].BMC Genomics,2015,16:743 |
[23] | CHOI M,LEEJ,LE M T,et al.Genome-wide analysis of DNA methylation in pigs using reduced representation bisulfite sequencing[J].DNA Research,2015,22(5):343-355. |
[24] | LI Z,LIU J,ZHAO F,et al.Genome-wide association studies for growth and meat production traits in sheep[J].PloS One,2013,8(6):e66569. |
[25] | STRATZ P,WELLMANN R,PREUSS S,et al.Genome-wide association analysis for growth,muscularity and meat quality in Pietrain pigs[J].Animal Genetics,2014,45(3):350. |
[26] | KADARMIDEEN H N.Biochemical,ECF18R,and RYR1 gene polymorphisms and their associations with osteochondral diseases and production traits in pigs[J].Biochemical Genetics,2008,46(1-2):41. |
[27] | YUAN X L,GAO N,XING Y,et al.Profiling the genome-wide DNA methyation pattern of porcine ovaries using reduced representation bisulfite sequencing[J].Scientific Reports,2016,6:22138. |
[28] | HAO Y,CUI Y J,GU X H.Genome-wide DNA methylation profiles associated with constant heat stress in pigs as measured by bisulfite sequencing[J].Scientific Reports,2016:27507. |
[29] | 张恬.猪肌内脂肪全基因组甲基化差异分析及候选基因研究[D].北京:中国农业科学院,2016. ZHANG T.Genomic methylation analysis and candidate genes of porcine intramuscular fat[D].Beijing:Chinese Academy of Agricultural Sciences,2016.(in Chinese) |
[30] | WHITESELL T R,CHRYSTAL P W,RYU J R,et al.Foxc1 is required for embryonic head vascular smooth muscle differentiation in zebrafish[J].Developmental Biology,2019,453(1):34-47. |
[31] | MA X,WANG L,SHI Z,et al.Mechanism of continuous high temperature affecting growth performance,meat quality,and muscle biochemical properties of finishing pigs[J].Genes & Nutrition,2019,14(1):23. |
[32] | LUDVIGSEN T P,OLSEN L H,PEDERSEN H D,et al.Hyperglycemia-induced transcriptional regulation of ROCK1 and TGM2 expression is involved in small artery remodeling in obese diabetic Göttingen minipigs[J].Clinical Science,2019,133(24):2499-2516. |
[33] | SHILEI C,ISAO I,HITOSHI N,et al.Induction of airway remodeling and persistent cough by repeated citric acid exposure in a guinea pig cough model[J].Respiratory Physiology & Neurobiology,2019,263:1-8. |
[34] | FISICARO N,SALVARIS E J,PHILIP G K,et al.FokI-dCas9 mediates high-fidelity genome editing in pigs[J].Xenotransplantation,2019,21(1):e12551. |
[35] | CHO I C,PARK H B,AHN J S,et al.A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs[J].PLoS Genetics,2019,15(10):e1008279. |
[36] | ALBUQUERQUE A.Identification of Differentially Expressed Key Genes of Longissimus Lumborum Samples from Portuguese Alentejano and Bísaro Local Pig Breeds[M].Florença,Itália:The X International Symposium on Mediterranean Pig,2019. |
[37] | YANG Z,ZHAO X,XIONG X,et al.Uncovering the mechanism whereby dietary nicotinic acid increases the intramuscular fat content in finishing steers by RNA sequencing analysis[J].Animal Production Science,2019,59:1620-1630. |
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