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Cloning and Bioinformatics Analysis of cDNA Expression Libraries in Eimeria acervulina

YAN Xiao-fei1, HUANG Bing2, HAN Hong-yu2, YANG Bin1, YUE Cheng3, ZHAO Qi-ping2, JIANG Lian-lian2, DONG Hui2   

  1. (1.Science and Technology Department, Xinjiang Agricultural University, Urumqi 830052, China2. Key Laboratory for Animal Parasitology of Ministry of Agriculture, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China3. College of Animal Medicine, Xinjiang Agricultural University, Urumqi 830052, China)

  • Revised:2014-04-18 Online:2014-07-20 Published:2014-08-21

Abstract: Analysing the new gene of E. acervulina sporulated oocysts stage by clone and bioinformatics technology. We acquired the full-length cDNA of EST sequence by RACE technique based on the cDNA expression library of E. acervulina. The cDNA of EST sequence coded protein was analysised and predicted by several bioinformatics software, the result showed the EST sequence was a new gene of E. acervulina sporulated oocysts stage, the GenBank ID was EU590120. The EST sequence including a 492 bp open reading frame which coded 163 amino acids residues,the theory of molecular weight was 17.049 ku, isoelectric point was 6.69, 8 acidic amino acids(Asp + Glu), 8 basic amino acids(Arg and Lys),molecular formula was C761H1223N199O219S12, the total average hydrophilic(GRAVY) was 0.731. The signal peptide analysis showed that the ORF encoding protein was an secretory protein containing a signal peptide and four transmembrane structures, its the amino acids residues between 105 to 115, 28 to 32 and 132 to 138 had strong hydrophobicity. At the same time, the protein contains one protein kinase C phosphorylation sites, one N-glycosylation sites, two casein kinase Ⅱ phosphorylation site, four N-end nutmeg acetoxylation site. The bioinformatics analysis showed that the ORF encoding protein possess several biological function sites and potential antigen epitopes.

Key words:

chickencoccidiaEimeria acervulinamso-bidi-font-family: 宋体">;new genecloningbioinformatics